PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc02243.1.g00170.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 297aa    MW: 32363.6 Da    PI: 8.6876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc02243.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19109159155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  Zpz_sc02243.1.g00170.1.am.mk 109 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 159
                                   679****999.**********8...3.35***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.7E-31110173IPR001471AP2/ERF domain
PROSITE profilePS5103220.824110167IPR001471AP2/ERF domain
PRINTSPR003671.8E-9111122IPR001471AP2/ERF domain
PfamPF008478.1E-13111159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-28111167IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-19111167IPR016177DNA-binding domain
CDDcd000181.04E-16111169No hitNo description
PRINTSPR003671.8E-9133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPGAGISSAF LPPPRQLSIS PSSRLSRLRS SVRPSVLPSV CLSSINTSSC VPRQAKGYSK  60
TRPQVTTRVM EADRSQQQHQ KSTGRKCCPL RRSRKGCMKG KGGPENQQCP FRGVRQRTWG  120
KWVAEIREPN RGARLWLGTF ATALEAARAY DAAARALYGD CARLNLATTA SLVAAGRSMT  180
TSCCSADDSA ASSSVASQLK DAVVLVPGER QCLMTQQDAA AGGMDHTVVR SRTRTDQLLQ  240
DDDDEDFEQF VTRLPKAEDF GLEGFPPEVF DDDATVGICW PDHTCWPAEM VQLVPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-13111166359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-13111166662ATERF1
3gcc_A2e-13111166662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9414351e-85EU941435.1 Zea mays clone 1451684 mRNA sequence.
GenBankEU9764781e-85EU976478.1 Zea mays clone 895667 mRNA sequence.
GenBankKJ7276751e-85KJ727675.1 Zea mays clone pUT5602 AP2-EREBP transcription factor (EREB89) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.13e-66PREDICTED: dehydration-responsive element-binding protein 2C
SwissprotQ84ZA16e-68DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY935e-66A2YY93_ORYSI; Putative uncharacterized protein
STRINGLOC_Os08g45110.19e-66(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.18e-28ERF family protein